S. Dias,
T. Simões,
F. F. Fernandes,
A. Martins,
A. Ferreira,
J. A. C. Jorge,
A. Gomes,
CavBench: a benchmark for protein cavity detection methods,
PLoS ONE,
Vol. 14,
No. 10,
pp. 1 - 16,
October,
2019
| BibTex
T. Simões,
D. Lopes,
S. Dias,
F. F. Fernandes,
J. Pereira,
J. A. C. Jorge,
C. Bajaj,
A. Gomes,
Geometric Detection Algorithms for Cavities on Protein Surfaces in Molecular Graphics: A Survey,
Computer Graphics Forum,
Vol. 36,
No. 8,
pp. 643 - 683,
December,
2017,
| Abstract
| BibTex
S. Dias,
A. Martins,
Q. Nguyen,
A. Gomes,
GPU-Based Detection of Protein Cavities using Gaussian Surfaces,
BMC Bioinformatics,
Vol. 18,
No. 2017,
pp. 493:1 - 493:10,
November,
2017
| BibTex
S. Dias,
Q. Nguyen,
J. A. C. Jorge,
A. Gomes,
Multi-GPU-based detection of protein cavities using critical points,
Future Generation Computer Systems,
Vol. 67,
No. 2017,
pp. 430 - 440,
February,
2017
| BibTex
S. Dias,
A. Gomes,
Triangulating Molecular Surfaces over a LAN of GPU-Enabled Computers,
Parallel Computing,
Vol. 42,
No. 10,
pp. 35 - 47,
February,
2015,
| Abstract
| BibTex
S. Dias,
A. Gomes,
Graphics processing unit-based triangulations of Blinn molecular surfaces,
Concurrency and Computation: Practice and Experience,
Vol. 23,
No. 17,
pp. 2280 - 2291,
December,
2011,
| Abstract
| BibTex
S. Dias,
A. Gomes,
GPU-based Triangulation of the van der Waals Surface,
IEEE International Conf. on Bioinformatics and Biomedicine - BIBM,
Hong-Kong,
China,
Vol. -,
pp. - - -,
December,
2010
| BibTex
A. Gomes,
S. Dias,
J. Morgado,
Polygonization of Non-homogeneous Non-manifold Implicit Surfaces with Tentative Topological Guarantees,
IEEE World Congress on Computational Intelligence - WCCI,
Barcelona,
Spain,
Vol. -,
pp. - - -,
July,
2010
| BibTex
S. Dias,
A. Gomes,
CUDA-based Triangulation of Convolution Molecular Surfaces,
ACM Symp. on High Performance Distributed Computing - HPDC,
Chicago,
United States,
Vol. -,
pp. - - -,
June,
2010
| BibTex
